Showing posts with label Genetics. Show all posts
Showing posts with label Genetics. Show all posts

Thursday, May 12, 2016

Why Are White Horses Called Gray?

Any equestrian has experienced the average pedestrian commenting on the pretty white horse out in the pasture or in the arena. Here it comes: the eyeroll, the sigh. "It's called gray, not white." Every equestrian knows that. Duh! However, the embarrassing question of "why" comes and you realize that the question is completely legit. And you don't know the answer.

OK, so most equestrians know that most white horses are called gray, even if they don't know why. Some people like to get technical and specify what kind of gray the horse is: dapple gray, iron gray, rose gray, flea-bitten gray. Whatever. None of those are helpful or relevant, and don't answer the question. Here is the logic behind the fact:

Gray horses are born with the gene called- well, gray - and is abbreviated with a G. What the gene does is it slowly adds more and more white hairs to the horse until it turns completely white....or mostly white. This is called de-pigmentation. Every horse that turns gray does so at a different pace. There are many stages of gray, and each stage looks a little different. The technical terms mentioned earlier are not relevant because gray is a progressive color. Each stage might be permanent, or not.

When gray horses are born, they look like any ordinary foal. Cute, and not white. The gray gene (G) is inherited seperately from other color genes, and gray is not a color by itself. Instead, it modifies and changes an existing color that is already there.

Photo contributed by Katy Heck Anderson

Photo contributed by Giorgia Guzman Lucatti

The next stage: as the horse gets older, more and more white hairs cover the body. Some horses go through a bit of a hyper-pigmentation process, turning their original foal color to something darker, usually a weird shade of dark gray, or appear a bit like a roan because of all the white sprinkled throughout their body. The horse below is the same as the foal in the above picture, at 8 months.
Photo contributed by Giorgia Guzman Lucatti

The dapple gray stage is kind of dicey; some horses remain dapple gray for the rest of their lives, and for some it is very fleeting. A dapple gray is when the horse is mostly covered in white hairs, with some dark shades showing through. Some horses that were originally a red color (chestnut, bay, palomino, etc.) might be reddish in color. Some people like to call those "rose grays", although I prefer to avoid being over-technical as it really doesn't matter. The horse is still gray.
Photo contributed by Kari Topjian-Cohen of Dipity Dew


Photo contributed by Jenna Chasnov



The "finished" gray stage is when the horse has turned completely white. Some horses take a long time to turn completely white, and some don't turn all the way white at all and stay in the dapple stage. This is the most commonly mistaken phase that a horse will be called white because, well, he is.

Photo contributed by Ashley Gerrard

Photo contributed by Johna Racquel Pink

Another very common stage of graying that many horses go through is called flea-bitten gray. Genetically, no one knows why it happens. It usually happens after the horse has turned completely white, although some horses begin developing flea-bites while they are still in the dapple gray phase.

Photo contributed by Heather Kaplan

Some individual breed peculiarities:
-Percherons tend to have an incredibly slow de-pigmentation rate, and typically stay in the dapple gray stage most of their lives. Percherons also do not usually develop flea-bites.
Photo contributed by Lauren Zimmer

-Arabians have the highest tendency to be flea-bitten, and also are known for having the most dramatic dense flea bites than any other breed, although any horse regardless of breed can develop flea-bites. Sometimes they can be so dense the horse almost looks like it is re-pigmenting.
Photo contributed by Melissa Rose Obermann

-Color breeds such as Paints and Appaloosas can also be gray, but because the gray covers up the coveted unique color the individuals are less desireable in breeding programs. The horse below is a grayed-out paint.
Photo contributed by Cassidy Allison

Now, not all white horses are gray, but it is by far the most common white horse color. Other white horse colors include double cream (always have blue eyes), maximum sabino (white with pink skin and dark eyes), and dominant white (same as maximum sabino).

Friday, August 21, 2015

Horse Color Genetics: A Little More on Sabino

Here is the last post I did on overo, but since I have learned much more and would like to do seperate posts, going a little more indepth on each overo type.

Sabino is a part of the KIT gene, which are a set of genes that share the same locus. Roan, dominant white, and tobiano all fall in as some of the others. It is also an incomplete dominant gene, meaning that, whether in heterozygous or homozygous form, the pattern will express itself in different ways.

Sabino is also classified as an overo pattern. However, it has so many different forms that many people don't know how to describe it. The following horses are all sabino:




While the two horses in the middle have very similar markings, the top and bottom one aren't even comparable. That is how much variation there is in the mutation.

The first three horses were all heterozygotes; one dominant copy of the gene. The last one is what is called 'maximum sabino', and it is homozygous for sabino, or SB1. Along with dominant white, maximum sabino can sometimes be confused for albino, but in reality it is, just like dominant white, like a giant white spot that covers up the color underneath. They always have dark eyes, unless combined with other genes which might cause blue eyes.

In the most recent equine genetics book available, The Equine Tapestry, Lesli Kathman talks a little about SB1 and why it has the number on the end. Scientists are anticipating more sabino mutations that are yet undiscovered, but SB1 is the only one that is testable at the moment.

Within the heterozygous range, the pattern can vary immensely, from almost not there, to a fully fledged pinto pattern that can be mistaken as nothing else. Because of this, sabino is hard to breed for. Minimum and maximum form within the heterozygotes is not neccesarily transferred from parent to offspring. For example: a maximum heterozygote could produce a minimum heterozygote, and vice versa.

Note: the difference between maximum sabino heterozygotes and maximum sabino homozygotes is tremendous; the former usually represents itself in the loud pinto form, the latter in the all white form.

Many heterozygous sabinos have some kind of roaning, making the patches less defined than many of the other pinto genes. Some have even been mistaken as plain 'roan' (also sometimes called true roan). Any of the above horses have just the tiniest bit of roaned out bit, but be careful when identifying sabino's, as horses that actually carry both roan and sabino will probably be more defined than you would think.

Sabino can be identified easily in a more maximum form, by the irregular splotchy patches that look like the horse was randomly splattered with paint, and is usually accompanied by some kind of large face marking and stockings. Minimum forms can be easy to mistake, however, for minimum forms of other patterns such as frame or splash. Sadly, I have no rules as to how to differentiate the two, other than the tendency to 'behave' differently. Maximum heterozygous forms can be almost indistinguishable from several of the dominant white mutations, especially within Arabians. The two arabians below have good examples of what some may not recognize as a pinto pattern.

In breeds where pinto colors are not 'available', like Arabians and Clydesdales, sabino is very much a part of. It has been noted, however that Clydesdales do not carry SB1, but almost every single one has some form of sabino. The mutation may be specific to the breed, but that is yet unknown. Notice the large face markings, tall stockings, and belly spots, which all are indicators of some kind of white patterning gene.

If many breeds allow sabino, but not other pinto patterns, the question my mind keeps wandering back to is this: should sabino actually be considered a pinto gene? In most cases, most horsemen don't consider bald face markings, tall stockings, or even small belly spots to be anything of consequence. And homozygous sabinos can barely be called pinto at all.

I would say, in my own opinion, that minimum heterozygous sabinos are much more common than maximum heterozygous sabinos. Even if you look up pictures of the former, there are many more than, because the owners don't see them as anything in particular, aren't labeled as such.




Tuesday, April 7, 2015

Horse Color Genetics: The Silver Gene

Review: E/e=black or red, A/a=bay or black

Dilute genes are any genes that make the horse turn a lighter color, like dun, cream, or champagne. Silver is sometimes put in the same category, but I personally don't think of it as a dilute, but more of a modifier.

Silver, similarly to agouti, only works on horses with dominant extension (E/e, or E/E). A horse must have black pigment for silver to be 'active'. It won't show up on a horse with red pigment (e/e).

What exactly is silver? A horse with black pigment and the silver gene (abbreviated with a Z) will always have a significantly lightened mane and tail, which can range from a silver color (hence the name), to a blonde or cream color. Sometimes even a bizarre orange color, like the Morgan below.

All black pigment, whether on just the legs or over the whole body, depending on whether the horse is black or bay, is usually lightened to some degree. The normal color is sort of chocolate, but it can be much darker, but not quite pure black. The one below is on the darker end. If it is a bay horse, then the whole body will not be lightened, but the black on the legs will.

Silver is a simple dominant gene, with exceptions. One copy or two dominant copies won't make a difference, the horse will look the same. The exception is a horse with red pigment will not be silver, like I mentioned before. There is a catch, and that is that red horses, or horses with recessive extension, can still carry the gene. A red horse can have the silver gene and hide it, since there is no black pigment to lighten. The pony below could carry it, and when crossed with a black or bay horse could produce a silver baby.


When paired with a black horse, it is called 'silver dapple' or sometimes 'black silver', and with bay, 'silver bay'. Basically, add on silver to whatever the color is, with the exception of silver dapple. Silver buckskins are very pretty, although unusual. Not neccesarily rare, but silver is not very often paired with other modifiers, but it is possible. The first pony is a silver bay, and the one below is a silver buckskin.


Flaxen chestnut, which can be a very dark color, is sometimes confused with silver dapple. Because a red horse can range in color from bright red to a liver color, and then paired with a cream mane and tail, the darker flaxen chestnuts are sometimes easy to mistake as silver dapple, and vice versa. However, the silver gene usually causes the mane and tail to be not nearly as white as a flaxen chestnuts. The horse below is bay roan silver.


The color has been partially isolated in particular breeds such as Rocky Mountain, Morgan, Shetland, Miniature, and Icelandic. It can also be in Quarter horses or other breeds, but is more unusual.

Monday, April 6, 2015

Using Horse Colors to Know a Purebred

There are certain horse registries where only certain colors are allowed. Most registries have colors that are not neccesarily 'illegal', but just aren't present in a purebred. Using this information, you can have a clue as to the breed of the horse, and also to recognize a non-purebred when you see one. This could also be useful in being angry at model horse makers for using colors that are 'illegal' in certain breeds.

Let's begin with Arabians. Most Arabs are recognizable, yet the colors allowed are very limited. The coat colors allowed are:

Base colors (red, black, bay, brown)
Gray
Roan/Rabicano (it appears the AHA identifies rabicano as roan, although true roan is not apparent in the breed)
Sabino (Although not SB1, as yet unidentified)
Dominant White (careful when identifying, this can be confused for other forms of pinto)

Colors NOT allowed:
Cream (that includes palomino and buckskin)
Dun
Champagne
Appaloosa
Tobiano
Frame Overo
Splashed White
Roan
Silver

Here is a stallion that appears to be pure Arab, but his coat gives him away. The owner states that he is 7/8 pure Arabian, which is about as good as it gets in terms of color and breeding.

Most of the dominant white coats actually look more sabino compared to several of the other dominant white mutations, so they are a little more recognizable than other pinto patterns.

Quarter Horses:
The AQHA is very forgiving, and are annoyingly un-meticulous about the registry colors. There aren't really any rules. They can come in every color under the sun, but AQHA doesn't allow loud pinto patterns. Cropout-producers would be allowed, which honestly isn't fair because purebred Quarter horses could carry something like sabino and produce a loud sabino foal that couldn't be registered.

Thoroughbred:
The Jockey Club is a little unusual in that there are no genetics taken into account. Palomino is allowed, yet buckskin or any double dilutes aren't mentioned. The Jockey Club seems a bit indifferent to actual color. If another color is present, they wouldn't care about the color; rather that the foal would not be purebred.

Colors allowed:
All base colors
Palomino (am I the only one who wants to know why there aren't more of these?!?)
Gray
White (this may be double-dilute, or dominant white. Quite a few white patterning mutations are found in Thoroughbreds)

Colors Not Allowed (or simply not present)
Dun
Champagne
Rabicano
Pinto (including, I believe, SB1, meaning unusual markings wouldn't exist)
Appaloosa

They also mention roan, but it is listed with gray almost as though the process of graying could count as roan. Whether roan is actually apparent in Thoroughbreds I am unsure.

Mustangs:
Because Mustangs are allowed to just breed as they want, almost every color is allowed. Again, whether the actual gene is available is the question. I don't think any genetic studies have been done on Mustangs, other than assuming their color genes are the same because they originated from the other horses. The BLM is not really concerned about the genetics, because most people do not buy their Mustangs for breeding purposes. There aren't any rules either, so I am going to have to guess as to which colors are 'available'. Also some areas of the BLM have more color variation than others. The only color I think isn't present at all is champagne, which I believe is a domestic mutation.

Tenessee Walking Horse:
The TWHBEA is relatively loose, and Tenessee Walkers generally come in a rainbow of colors, which can make for very interesting breeding options. 

The colors allowed: 
All base colors
Cream
Champagne
Tobiano
Sabino
Roan\
Dun
Silver
Grey
'White' (it states in the rules that white is rare; I'm going to guess that they are referring to some form of dominant white)
"Overo" 

There are several things I was surprised about; I have never heard of a dun TW, but upon Googling it, there are some, but not many.
Another possibly confusing term is 'overo'. I've seen many tobianos...

And some sabinos....

But did not know that 'overo' was a possibility. The question: which one? Sabino has already been listed, so it has to be either splash, or frame.

This one looks frame, and it turns out there are quite a few of them. I can't find anything on splashed white.
To wrap all that up, the only color 'out' is appaloosa, and even then there is a registry for spotted gaited horses, a 'Walkaloosa'. 

There might be a second post in the future, talking a little more about several registries with unusual color rules.







Friday, March 27, 2015

Why the "Strong Gene" Theory Doesn't Work

While looking at stallions available, I have heard many breeders make the mistake of assuming that a horse has 'strong genes' for a certain color.

For example: one breeder owned a APHA paint stallion. They said that 90% of his foals (he had quite a few) were paint-marked. Therefore, the paint genes were 'strong', but they couldn't guarantee future offspring would be marked as well.

By using what we know to be common sense in genetics, there are no such things as 'strong' genes. There are only heterozygotes or homozygotes, making either a 50% chance of a gene or 100% chance.

Now, 90% paint-marked foals from a heterozygous stallion may seem like a really large number, but you have to remember that there are other things that could contribute to this.

1. Breeding paint to paint could mean that whatever paint genes the foal inherited could have been from the mother. 

2. The stallion is truly homozygous, but some foals were so minimally marked they were recognized as solid. In which case, that foal could produce a crop-out paint and cause a lot of confusion.

Another common mistake among breeders is to assume a horse that has like-parents produce homozygous. For example: a black horse has two black parents. Therefore he is homozygous for black.

This is also not true. If one or both parents were heterozygous for black, then the resulting foal could be heterozygous or homozygous.

All this to say: if you choose to breed and color means something to you, don't believe anything the breeder says about the numbers. Unless you use common sense to figure it out (i.e. look at other offspring and parents), or he has done a genetic color test.

For more reading on the basics, go here: http://michaelashopeandhorses.blogspot.com/2014/11/horse-color-genetics-re-explaining.html

For more reading on crop-out paints and why they happen, go here: http://michaelashopeandhorses.blogspot.com/2014/10/horse-color-genetics-identifying-crop.html

Friday, February 27, 2015

An Interesting Bit on Albinism

My dad was recently talking to me about albinism because one of his insurance customers has a grown albino child. He was very interested to hear about albino, and also was fascinated when the man told him that everyone has the possibility to produce albino. This is not exactly true, but it is close.

Everyone has heard of various albino creatures, and most people know that it is a recessive gene. But does anyone actually know what that means?

Within people, there are several different kinds of albinism. The exact way of defining it is blurred by what we see in animals. According to NOAH (National Organization for Albinism and Hypopigmentation), most people with albinism do NOT have red eyes, which is often the most defining characteristic that we think of. What else is partially myth to albinism, and what actually causes it?

Albino is not a gene in itself, but what causes it is the gene that creates pigment. Similarly to any other genetics, when both genes are turned 'off', it creates no pigment. The reality of what no pigment means can actually vary widely within the individual. Some people do not even appear 'albino' by our standards. I am now hesitant to add any photos, unsure of what the truth about each individual case whether human or animal is.

The statement that 'all people carry the albino gene' is not quite true, because most people do not carry it. If everyone carried it, then one in four people would be albino. That is what makes it rare. The only time it can happen is when two people who are heterozygous (carriers of the recessive gene) have a baby, and only then there is a 25% chance of albino. 

Using the 'albino is recessive', that means that pigment genes are dominant. A heterozygote is a carrier for that recessive gene, but phenotypically they will appear like any other person. And, just because they are a carrier does not mean that every child of theirs will be albino.

Lastly, because this is a horse genetics blog, stay tune for Part Two: Albinism in Horses

Thursday, February 26, 2015

Albinism in Horses

To follow up with the promised post after the last one, I of course have to talk about albinism in horses. To recap, albino is when there is no pigment in the skin; all genes that control color are off.

There are quite a few curiosities on the subject, including a simple fact that will surprise you: albinism has never ever been proven in horses.

While you may be able to Google quite a few images of horses that appear albino, there has never been a case in which they weren't able to prove it was something else. The horses above came up in the search, as well as the ones below.



As mentioned in the last post, red eyes only sometimes indicate albino, and there are several other things besides that would. However, with horses, there is no picture I can find of a horse with red eyes that doesn't look photo shopped, or when you look close up are actually blue eyes surrounded by pink skin.

According to various sources, blue eyes in horses is not exactly lack of pigment, and is as close to non-pigmented eyes as you can get, but again there isn't no pigment.

The most commonly mistaken color for albino is cremello, because of the very light-colored skin that often is pink with blue eyes. However, using the method of deciphering albino as in the last post, albino has no base color, and there is no pigment behind it. Cremello is a chestnut horse with two cream genes, so it would indeed have some pigment. Other double-cream horses (perlino, smoky cream) may be categorized among cremello in being mistaken for albino.
If you were to take the tiniest bit of red paint, and then add a dose of white, it makes pink. If you add even more white, it becomes light pink. Even if you keep adding white to the original red, the paint will never be truly white, no matter how much you put in.

One of the closest things to albino scientifically is dominant white. Dominant white is considered to be a white-spotting genes, along with patterns such as tobiano and frame overo. The main difference with dominant white is that it often shows up as one, huge spot, entirely covering the body and blotting out the under color. Did you notice that last sentence? 'The under color'. There is a color under there that they can pass on.

Dominant white can be expressed in many different ways, even within each specific mutation. It isn't always predictable, and because of that it isn't a fool-proof way to describe as albino. It seems like most of the time, it leaves the eyes their original brown color, although there are some cases of white. That would depend on the specific mutation.

Fully-expressed sabino is similar to dominant white, except that sabino never causes blue eyes, leaving the eyes dark.

So, I guess the underlying question is: why? Why has albino never been proven in horses? Why would horses be the exception?

Albino means there is no pigment whatsoever, and they never have any color to pass on. With all these genes, the horse also has a color underneath. The only way for a horse to be albino would be that somehow, the gene that causes pigment (extension) wouldn't be working.

Extension is the only gene that causes pigment. All the rest of the genes I speak of are simply instructions, or a way to lighten what was already there. Isn't that interesting?

For albino to happen, extension would have to find a way to not work. Because it is a dominant gene, one or two copies produces black pigment. In recessive form, it causes red pigment. That doesn't leave any option open for no pigment, see?

In the whole history of horses, we haven't found a way for it not work as of yet. Albino hasn't happened yet, that doesn't mean it can't. Extension would have to find a way to be missing entirely from the genome, but how when both parents have it boggles my mind. Colors, and the way they work, and the way we percieve them is constantly changing.

Friday, February 20, 2015

What Does Phenotype Mean?

On the Equine Genetics page on Facebook, there are a lot of people that use the term 'phenotype'. What does it mean?

It is a word that means 'the physical appearance of something', although a lot of people that use it have a way of, even on the internet, sounding snobby because a lot of people don't know what that means. And that is ok! I don't use it because it is just one more long word that confuses people.

In an example of how to use it: a black horse with one cream gene is called smoky black, although phenotypically, it may look the same as a normal black horse. Can you tell the difference in the horses below? Probably not. Phenotypically (or, the way they appear) they are the same.




Or: a chestnut that carries dominant agouti will have the same phenotype as one without.


See what I'm saying? Now that you know the word, you may want to be careful who you use it around.

Here is a post I did on several differences between horses who have the same genes, but different phenotypes: http://michaelashopeandhorses.blogspot.com/2014/11/horse-color-genetics-differentiating.html

Monday, February 16, 2015

What Exactly is the Job of Extension and Agouti?

Since my previous post on basic genetics, the one in which I talk about base colors, I explained that dominant extension makes a horse black, and recessive makes red, and if a horse carries dominant black and dominant agouti, it makes bay. In a sense, basically what I am saying is that a horse is either black based or red based, but that isn't true.

If you assume that what I said about the dominant form of extension makes black and added on top of that makes bay, then I am basically saying that agouti is a modifier. Agouti modifies extension. Read that statement again:  you will see the fault in it. If agouti is dominant, and is a modifier, then it would modify all extension, yet science dictates that that agouti only modifies dominant extension. In that case, it wouldn't be dominant. Somewhere, there is a breakdown that doesn't make sense.

Basically, erase everything I ever said about agouti being a modifier, and pay close attention: the order in which we mentally play out colors doesn't actually work the easy way. 

The truth is that extension does not create black pigment; extension is present in horses that are not black. That being said, what extension does is it creates black and red pigment. The dominant form of extension creates black, but when paired with agouti what exactly happens is a bit mixed in people's minds.



Think of agouti as instructions: it instructs the black pigment where to go. Even in recessive form, they are still instructions. Agouti is still telling the black where to go. 

So: DO NOT THINK OF EXTENSION AS THE BLACK GENE, AND DO NOT THINK OF AGOUTI AS THE BAY GENE. Because in truth, agouti makes both bay and black. Does that make sense? The absense (or recessive form) of agouti is actually what makes the horse solid black, and even if the horse was dominant for extension and agouti didn't exist, then maybe the horse wouldn't be black at all. 

Agouti does not add or dilute red pigment to make a black horse. This is not particularly important in actually understanding how colors work, and if you read this to a beginner it may make no sense whatsoever. The basic 'extension makes black, and agouti makes bay' will work up to a point, but understanding that agouti does not modify 'what is already there' is nice to know at some point. And it is science, and trying to make it simpler than what it is is fine, but NOT simplifying it into something not true.